Visualizing Data using t-SNE, Laurens van der Maaten and Geoffrey Hinton, 2008Journal of Machine Learning Research, Vol. 9DOI: 10.5555/1755833.1755834 - The original academic paper introducing t-Distributed Stochastic Neighbor Embedding (t-SNE), detailing its mathematical foundations and empirical performance for high-dimensional data visualization.
UMAP: Uniform Manifold Approximation and Projection for Dimension Reduction, Leland McInnes, John Healy, Nathaniel Saul, Lukas Großberger, 2018Journal of Open Source Software, Vol. 3 (The Open Journal)DOI: 10.21105/joss.00861 - The seminal publication introducing UMAP, a modern manifold learning algorithm recognized for its efficiency and improved preservation of global data structure compared to t-SNE.
Deep Learning, Ian Goodfellow, Yoshua Bengio, and Aaron Courville, 2016 (MIT Press) - This widely-cited textbook includes a dedicated chapter (Chapter 15: Representation Learning) that discusses dimensionality reduction and manifold learning in the context of deep learning, providing essential background for autoencoders.